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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs16949157 chr18:44691324 A/G 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs16949275 chr18:44700703 A/G 3.87E-6 1026 21.7 21.58 18.23 KM Plot
BRCA rs16958432 chr18:44631773 G/A 2.08E-5 1024 21.57 22.2 18.13 KM Plot
BRCA rs16958440 chr18:44632884 C/G 2.08E-5 1024 21.57 22.2 18.13 KM Plot
BRCA rs16958699 chr18:44654846 T/C 2.03E-5 1023 21.7 21.93 18.13 KM Plot
BRCA rs16958701 chr18:44655241 T/C 2.03E-5 1023 21.7 21.93 18.13 KM Plot
BRCA rs16962598 chr13:104176804 A/G 1.47E-10 1028 8.87 27.5 21.17 KM Plot
BRCA rs16982912 chr19:52165127 C/T 1.14E-5 1028 22.2 20.37 23.8 KM Plot
BRCA rs17011768 chr2:76001766 G/T 4.86E-6 1022 21.43 23.87 26.4 KM Plot
BRCA rs17011776 chr2:76001872 C/A 4.86E-6 1022 21.43 23.87 26.4 KM Plot
BRCA rs17041821 chr4:111392963 C/T 7.8E-7 1028 21.57 21.37 24.43 KM Plot
BRCA rs17107629 chr5:147411435 G/A 4.52E-5 1028 22 18.4 20.87 KM Plot
BRCA rs17108189 chr14:79211581 C/T 6.72E-6 1028 18.6 24.07 21.43 KM Plot
BRCA rs17112293 chr11:110997948 C/T 2.62E-5 1028 23.17 23.43 21.27 KM Plot
BRCA rs17127888 chr10:91589483 A/G 7.62E-7 1020 21.62 21.97 5.33 KM Plot